IL_8Y0X_089

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8Y0X|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_089 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2153

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8Y0X|1|L5|U|1957
8Y0X|1|L5|A|1958
8Y0X|1|L5|U|1959
8Y0X|1|L5|A|1960
8Y0X|1|L5|G|1961
8Y0X|1|L5|A|1962
8Y0X|1|L5|C|1963
8Y0X|1|L5|A|1964
8Y0X|1|L5|G|1965
*
8Y0X|1|L5|C|2022
8Y0X|1|L5|C|2023
8Y0X|1|L5|G|2024
8Y0X|1|L5|A|2025
8Y0X|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40