IL_8Y0X_155

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

8Y0X|1|L5|U|4634, 8Y0X|1|L5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_155 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2492

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8Y0X|1|L5|U|4632
8Y0X|1|L5|G|4633
8Y0X|1|L5|U|4634
8Y0X|1|L5|A|4635
8Y0X|1|L5|U|4636
8Y0X|1|L5|G|4637
*
8Y0X|1|L5|C|4662
8Y0X|1|L5|G|4663
8Y0X|1|L5|A|4664
8Y0X|1|L5|A|4665
8Y0X|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31