IL_8Y0X_158

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8Y0X|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_158 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.237

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8Y0X|1|L5|A|4681
8Y0X|1|L5|U|4682
8Y0X|1|L5|U|4683
8Y0X|1|L5|A|4684
8Y0X|1|L5|U|4685
*
8Y0X|1|L5|A|4705
8Y0X|1|L5|G|4706
8Y0X|1|L5|A|4707
8Y0X|1|L5|A|4708
8Y0X|1|L5|U|4709

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40