IL_8Y0X_200

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8Y0X|1|S2|U|305, 8Y0X|1|S2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_200 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3904

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8Y0X|1|S2|C|216
8Y0X|1|S2|A|217
8Y0X|1|S2|U|218
8Y0X|1|S2|U|219
*
8Y0X|1|S2|A|302
8Y0X|1|S2|C|303
8Y0X|1|S2|C|304
8Y0X|1|S2|U|305
8Y0X|1|S2|C|306
8Y0X|1|S2|G|307
8Y0X|1|S2|G|308
8Y0X|1|S2|G|309

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8