IL_8Y36_110

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y36_110 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.1821

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8Y36|1|B|U|6
8Y36|1|B|G|7
8Y36|1|B|A|8
*
8Y36|1|B|U|107
8Y36|1|B|U|108
8Y36|1|B|G|109

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL18