IL_8Y38_108

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

8Y38|1|A|U|2716, 8Y38|1|A|A|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_108 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0693

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8Y38|1|A|U|2714
8Y38|1|A|G|2715
8Y38|1|A|U|2716
8Y38|1|A|A|2717
8Y38|1|A|C|2718
*
8Y38|1|A|G|2745
8Y38|1|A|G|2746
8Y38|1|A|U|2747
8Y38|1|A|A|2748
8Y38|1|A|G|2749

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain L

Large ribosomal subunit protein bL17

Chain N

Large ribosomal subunit protein bL19