IL_8Y38_149
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- UGAAAGCC*GAGGG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y38_149 not in the Motif Atlas
- Geometric match to IL_5J7L_030
- Geometric discrepancy: 0.201
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8Y38|1|a|U|613
8Y38|1|a|G|614
8Y38|1|a|A|615
8Y38|1|a|A|616
8Y38|1|a|A|617
8Y38|1|a|G|618
8Y38|1|a|C|619
8Y38|1|a|C|620
*
8Y38|1|a|G|636
8Y38|1|a|A|637
8Y38|1|a|G|638
8Y38|1|a|G|639
8Y38|1|a|G|640
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain h
- Small ribosomal subunit protein uS8
- Chain p
- Small ribosomal subunit protein bS16
Coloring options: