IL_8Y39_045

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8Y39|1|A|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_045 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.1004

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8Y39|1|A|G|1075
8Y39|1|A|A|1076
8Y39|1|A|U|1077
8Y39|1|A|G|1078
*
8Y39|1|A|C|1165
8Y39|1|A|G|1166
8Y39|1|A|C|1167

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain K

Large ribosomal subunit protein uL16