IL_8Y39_119
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_119 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1251
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8Y39|1|B|C|69
8Y39|1|B|G|70
8Y39|1|B|A|71
8Y39|1|B|U|72
8Y39|1|B|G|73
8Y39|1|B|G|74
8Y39|1|B|U|75
8Y39|1|B|A|76
8Y39|1|B|G|77
*
8Y39|1|B|C|94
8Y39|1|B|U|95
8Y39|1|B|A|96
8Y39|1|B|G|97
8Y39|1|B|A|98
8Y39|1|B|G|99
8Y39|1|B|U|100
8Y39|1|B|A|101
8Y39|1|B|G|102
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- Large ribosomal subunit protein uL16
- Chain T
- Large ribosomal subunit protein bL25
- Chain U
- Large ribosomal subunit protein bL27
Coloring options: