IL_8Y39_143
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8Y39|1|a|A|540, 8Y39|1|a|U|542, 8Y39|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_143 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.189
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Y39|1|a|G|523
8Y39|1|a|U|524
8Y39|1|a|G|525
8Y39|1|a|C|526
8Y39|1|a|C|527
8Y39|1|a|A|528
8Y39|1|a|G|529
*
8Y39|1|a|C|536
8Y39|1|a|G|537
8Y39|1|a|G|538
8Y39|1|a|U|539
8Y39|1|a|A|540
8Y39|1|a|A|541
8Y39|1|a|U|542
8Y39|1|a|A|543
8Y39|1|a|C|544
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: