IL_8Y39_154
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGUAG*CGCAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 8Y39|1|a|A|710
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_154 not in the Motif Atlas
- Geometric match to IL_7A0S_004
- Geometric discrepancy: 0.3799
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8Y39|1|a|U|692
8Y39|1|a|G|693
8Y39|1|a|U|694
8Y39|1|a|A|695
8Y39|1|a|G|696
*
8Y39|1|a|C|707
8Y39|1|a|G|708
8Y39|1|a|C|709
8Y39|1|a|A|710
8Y39|1|a|G|711
8Y39|1|a|A|712
8Y39|1|a|G|713
8Y39|1|a|A|714
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- Small ribosomal subunit protein uS11
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