IL_8Y5K_066

3D structure

PDB id

8Y5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5K_066 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1516

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8Y5K|1|1|U|1720
8Y5K|1|1|G|1721
8Y5K|1|1|A|1722
8Y5K|1|1|G|1723
8Y5K|1|1|G|1724
*
8Y5K|1|1|U|1736
8Y5K|1|1|G|1737
8Y5K|1|1|G|1738
8Y5K|1|1|A|1739
8Y5K|1|1|G|1740

Current chains

Chain 1

23S rRNA

Nearby chains