IL_8Y5L_168
3D structure
- PDB id
- 8Y5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5L_168 not in the Motif Atlas
- Geometric match to IL_4LFB_070
- Geometric discrepancy: 0.3961
- The information below is about IL_4LFB_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29925.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
8Y5L|1|3|C|1407
8Y5L|1|3|A|1408
8Y5L|1|3|C|1409
*
8Y5L|1|3|G|1491
8Y5L|1|3|A|1492
8Y5L|1|3|A|1493
8Y5L|1|3|G|1494
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain Q
- 30S ribosomal protein S12
- Chain h
- viomycin
Coloring options: