8Y5L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y5L_001 | Pseudoknot geometry | ||
| HL_8Y5L_002 | No text annotation | ||
| HL_8Y5L_003 | No text annotation | ||
| HL_8Y5L_004 | No text annotation | ||
| HL_8Y5L_005 | No text annotation | ||
| HL_8Y5L_006 | No text annotation | ||
| HL_8Y5L_007 | No text annotation | ||
| HL_8Y5L_008 | No text annotation | ||
| HL_8Y5L_009 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5L_010 | T-loop with unstacked turn | ||
| HL_8Y5L_011 | No text annotation | ||
| HL_8Y5L_012 | Pseudoknot geometry | ||
| HL_8Y5L_013 | GNRA | ||
| HL_8Y5L_014 | GNRA | ||
| HL_8Y5L_015 | No text annotation | ||
| HL_8Y5L_016 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5L_017 | No text annotation | ||
| HL_8Y5L_018 | GNRA | ||
| HL_8Y5L_019 | No text annotation | ||
| HL_8Y5L_020 | GNRA wlth tandem sheared | ||
| HL_8Y5L_021 | No text annotation | ||
| HL_8Y5L_022 | UNCG variation | ||
| HL_8Y5L_023 | No text annotation | ||
| HL_8Y5L_024 | No text annotation | ||
| HL_8Y5L_025 | GNRA | ||
| HL_8Y5L_026 | No text annotation | ||
| HL_8Y5L_027 | No text annotation | ||
| HL_8Y5L_028 | GNRA wlth tandem sheared | ||
| HL_8Y5L_029 | No text annotation | ||
| HL_8Y5L_030 | GNRA | ||
| HL_8Y5L_031 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5L_032 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5L_033 | GNRA | ||
| HL_8Y5L_034 | No text annotation | ||
| HL_8Y5L_035 | Mini UNCG with extended bulge | ||
| HL_8Y5L_036 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5L_037 | UNCG | ||
| HL_8Y5L_038 | Mini UNCG | ||
| HL_8Y5L_039 | No text annotation | ||
| HL_8Y5L_040 | GNRA | ||
| HL_8Y5L_041 | UNCG | ||
| HL_8Y5L_042 | No text annotation | ||
| HL_8Y5L_043 | No text annotation | ||
| HL_8Y5L_044 | No text annotation | ||
| HL_8Y5L_045 | GNRA related | ||
| HL_8Y5L_046 | No text annotation | ||
| HL_8Y5L_047 | No text annotation | ||
| HL_8Y5L_048 | No text annotation | ||
| HL_8Y5L_049 | No text annotation | ||
| HL_8Y5L_050 | No text annotation | ||
| HL_8Y5L_051 | No text annotation | ||
| HL_8Y5L_052 | No text annotation | ||
| HL_8Y5L_053 | No text annotation | ||
| HL_8Y5L_054 | No text annotation | ||
| HL_8Y5L_055 | Pseudoknot geometry | ||
| HL_8Y5L_056 | GNRA | ||
| HL_8Y5L_057 | GNRA | ||
| HL_8Y5L_058 | No text annotation | ||
| HL_8Y5L_059 | No text annotation | ||
| HL_8Y5L_060 | GNRA variation | ||
| HL_8Y5L_061 | No text annotation | ||
| HL_8Y5L_062 | GNRA | ||
| HL_8Y5L_063 | GNRA | ||
| HL_8Y5L_064 | Ribsomal LSU H95 | ||
| HL_8Y5L_065 | No text annotation | ||
| HL_8Y5L_066 | UNCG variation | ||
| HL_8Y5L_067 | No text annotation | ||
| HL_8Y5L_068 | GNRA | ||
| HL_8Y5L_069 | No text annotation | ||
| HL_8Y5L_070 | No text annotation | ||
| HL_8Y5L_071 | Mini UNCG | ||
| HL_8Y5L_072 | No text annotation | ||
| HL_8Y5L_073 | No text annotation | ||
| HL_8Y5L_074 | GNRA | ||
| HL_8Y5L_075 | GNRA | ||
| HL_8Y5L_076 | No text annotation | ||
| HL_8Y5L_077 | GNRA related | ||
| HL_8Y5L_078 | GNRA | ||
| HL_8Y5L_079 | No text annotation | ||
| HL_8Y5L_080 | UNCG | ||
| HL_8Y5L_081 | GNRA | ||
| HL_8Y5L_082 | UNCG | ||
| HL_8Y5L_083 | GNRA wlth extra near cWW | ||
| HL_8Y5L_084 | GNRA variation | ||
| HL_8Y5L_085 | GNRA-like with tWH | ||
| HL_8Y5L_086 | No text annotation | ||
| HL_8Y5L_087 | GNRA | ||
| HL_8Y5L_088 | No text annotation | ||
| HL_8Y5L_089 | No text annotation | ||
| HL_8Y5L_090 | GNRA | ||
| HL_8Y5L_091 | GNRA | ||
| HL_8Y5L_092 | No text annotation | ||
| HL_8Y5L_093 | GNRA | ||
| HL_8Y5L_094 | GNRA | ||
| HL_8Y5L_095 | T-loop related | ||
| HL_8Y5L_096 | No text annotation | ||
| HL_8Y5L_097 | GNRA | ||
| HL_8Y5L_098 | GNRA | ||
| HL_8Y5L_099 | T-loop with 3 stacked bulged bases | ||
| HL_8Y5L_100 | No text annotation | ||
| HL_8Y5L_101 | No text annotation | ||
| HL_8Y5L_102 | GNRA | ||
| HL_8Y5L_103 | No text annotation | ||
| HL_8Y5L_104 | No text annotation | ||
| HL_8Y5L_105 | No text annotation | ||
| HL_8Y5L_106 | tRNA D-loop | ||
| HL_8Y5L_107 | tRNA anticodon loop | ||
| HL_8Y5L_108 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5L_109 | No text annotation | ||
| HL_8Y5L_110 | No text annotation | ||
| HL_8Y5L_111 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y5L_001 | Triple sheared with non-canonical cWW | ||
| IL_8Y5L_002 | Single bulged A | ||
| IL_8Y5L_003 | Minor groove platform | ||
| IL_8Y5L_004 | No text annotation | ||
| IL_8Y5L_005 | Single stack bend | ||
| IL_8Y5L_006 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8Y5L_007 | No text annotation | ||
| IL_8Y5L_008 | No text annotation | ||
| IL_8Y5L_009 | Isolated non-canonical cWW pair | ||
| IL_8Y5L_010 | No text annotation | ||
| IL_8Y5L_011 | No text annotation | ||
| IL_8Y5L_012 | Double sheared | ||
| IL_8Y5L_013 | AAA cross-strand stack | ||
| IL_8Y5L_014 | Isolated non-canonical cWW pair | ||
| IL_8Y5L_015 | tHW-tHW cross-strand stack | ||
| IL_8Y5L_016 | Single bulged A | ||
| IL_8Y5L_017 | Single bulged G | ||
| IL_8Y5L_018 | Triple sheared | ||
| IL_8Y5L_019 | Major groove platform | ||
| IL_8Y5L_020 | Multiple bulged bases | ||
| IL_8Y5L_021 | No text annotation | ||
| IL_8Y5L_022 | No text annotation | ||
| IL_8Y5L_023 | Stack outside cWW | ||
| IL_8Y5L_024 | Single stack bend | ||
| IL_8Y5L_025 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8Y5L_026 | Single bulged G | ||
| IL_8Y5L_027 | C-loop with bulged stacked A's | ||
| IL_8Y5L_028 | Isolated non-canonical cWW pair | ||
| IL_8Y5L_029 | Double sheared with non-canonical cWW | ||
| IL_8Y5L_030 | No text annotation | ||
| IL_8Y5L_031 | Single bulged C | ||
| IL_8Y5L_032 | UAA/GAN | ||
| IL_8Y5L_033 | SSU/LSU pseudoknot | ||
| IL_8Y5L_034 | Single bulged U | ||
| IL_8Y5L_035 | Kink-turn related | ||
| IL_8Y5L_036 | No text annotation | ||
| IL_8Y5L_037 | Isolated non-canonical cWW pair | ||
| IL_8Y5L_038 | Tandem non-canonical cWW pairs | ||
| IL_8Y5L_039 | Kink-turn | ||
| IL_8Y5L_040 | No text annotation | ||
| IL_8Y5L_041 | Major groove platform | ||
| IL_8Y5L_042 | Isolated cWS basepair | ||
| IL_8Y5L_043 | No text annotation | ||
| IL_8Y5L_044 | Kink-turn | ||
| IL_8Y5L_045 | C-loop | ||
| IL_8Y5L_046 | UAA/GAN | ||
| IL_8Y5L_047 | tSH-tHW-tHS | ||
| IL_8Y5L_048 | No text annotation | ||
| IL_8Y5L_049 | UAA/GAN | ||
| IL_8Y5L_050 | Tandem non-canonical cWW pairs | ||
| IL_8Y5L_051 | tSH-tHW | ||
| IL_8Y5L_052 | Single bulged U | ||
| IL_8Y5L_053 | No text annotation | ||
| IL_8Y5L_054 | tSH-tHW-tHS | ||
| IL_8Y5L_055 | 180 degree turn | ||
| IL_8Y5L_056 | Single bulged A | ||
| IL_8Y5L_057 | UAA/GAN variation | ||
| IL_8Y5L_058 | No text annotation | ||
| IL_8Y5L_059 | Isolated tWW turn | ||
| IL_8Y5L_060 | No text annotation | ||
| IL_8Y5L_061 | tSH-tSH-tHH-tHS | ||
| IL_8Y5L_062 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8Y5L_063 | Triple sheared | ||
| IL_8Y5L_064 | Single bulged A | ||
| IL_8Y5L_065 | Kink-turn related | ||
| IL_8Y5L_066 | Minor groove platform, major groove intercalation | ||
| IL_8Y5L_067 | Major groove intercalation | ||
| IL_8Y5L_068 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5L_069 | No text annotation | ||
| IL_8Y5L_070 | UAA/GAN related | ||
| IL_8Y5L_071 | No text annotation | ||
| IL_8Y5L_072 | Major groove platform | ||
| IL_8Y5L_073 | No text annotation | ||
| IL_8Y5L_074 | Single bulged U | ||
| IL_8Y5L_075 | Minor groove platform | ||
| IL_8Y5L_076 | Isolated tHS basepair with bulges | ||
| IL_8Y5L_077 | Isolated non-canonical cWW pair | ||
| IL_8Y5L_078 | No text annotation | ||
| IL_8Y5L_079 | No text annotation | ||
| IL_8Y5L_080 | No text annotation | ||
| IL_8Y5L_081 | Single bulged U | ||
| IL_8Y5L_082 | Double sheared | ||
| IL_8Y5L_083 | No text annotation | ||
| IL_8Y5L_084 | Single stack bend | ||
| IL_8Y5L_085 | Major groove platform | ||
| IL_8Y5L_086 | No text annotation | ||
| IL_8Y5L_087 | Double sheared with non-canonical cWW | ||
| IL_8Y5L_088 | Major groove platform | ||
| IL_8Y5L_089 | Isolated non-canonical cWW with bulges | ||
| IL_8Y5L_090 | No text annotation | ||
| IL_8Y5L_091 | Major groove platform with intercalation | ||
| IL_8Y5L_092 | Single bulged A | ||
| IL_8Y5L_093 | tSH-tHS-tHW | ||
| IL_8Y5L_094 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8Y5L_095 | C-loop | ||
| IL_8Y5L_096 | UAA/GAN related, with intercalation | ||
| IL_8Y5L_097 | Multiple bulged bases | ||
| IL_8Y5L_098 | UAA/GAN with extra cWW | ||
| IL_8Y5L_099 | No text annotation | ||
| IL_8Y5L_100 | Major groove intercalation | ||
| IL_8Y5L_101 | Multiple bulged bases with non-canonical cWW | ||
| IL_8Y5L_102 | tHS double platform | ||
| IL_8Y5L_103 | Major groove intercalation | ||
| IL_8Y5L_104 | No text annotation | ||
| IL_8Y5L_105 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5L_106 | Symmetric double minor groove platform | ||
| IL_8Y5L_107 | Bacterial 5S Loop E | ||
| IL_8Y5L_108 | Single bulged G | ||
| IL_8Y5L_109 | Single bulged A | ||
| IL_8Y5L_110 | No text annotation | ||
| IL_8Y5L_111 | Minor groove platform | ||
| IL_8Y5L_112 | Multiple bulged bases | ||
| IL_8Y5L_113 | Minor groove platform with extra cWW | ||
| IL_8Y5L_114 | Minor groove platform | ||
| IL_8Y5L_115 | No text annotation | ||
| IL_8Y5L_116 | No text annotation | ||
| IL_8Y5L_117 | No text annotation | ||
| IL_8Y5L_118 | Isolated cWH basepair | ||
| IL_8Y5L_119 | tWH-tWH-tHW-tHW | ||
| IL_8Y5L_120 | Minor groove platform | ||
| IL_8Y5L_121 | Kink-turn with non-sequential stacking | ||
| IL_8Y5L_122 | No text annotation | ||
| IL_8Y5L_123 | C-loop | ||
| IL_8Y5L_124 | Single bulged U | ||
| IL_8Y5L_125 | C-loop | ||
| IL_8Y5L_126 | Single bulged G | ||
| IL_8Y5L_127 | No text annotation | ||
| IL_8Y5L_128 | No text annotation | ||
| IL_8Y5L_129 | tSH-tHW-tWW | ||
| IL_8Y5L_130 | No text annotation | ||
| IL_8Y5L_131 | SSU/LSU pseudoknot | ||
| IL_8Y5L_132 | No text annotation | ||
| IL_8Y5L_133 | No text annotation | ||
| IL_8Y5L_134 | tSH-tHW-tHS | ||
| IL_8Y5L_135 | Major groove platform | ||
| IL_8Y5L_136 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5L_137 | No text annotation | ||
| IL_8Y5L_138 | Major groove platform; stack outside cWW | ||
| IL_8Y5L_139 | Single stack bend | ||
| IL_8Y5L_140 | Tandem non-canonical cWW pairs | ||
| IL_8Y5L_141 | Triple non-canonical cWW pairs | ||
| IL_8Y5L_142 | Kink-turn | ||
| IL_8Y5L_143 | Left turn | ||
| IL_8Y5L_144 | tSH-tHW-tHS | ||
| IL_8Y5L_145 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8Y5L_146 | Single bulged A | ||
| IL_8Y5L_147 | Single bulged G | ||
| IL_8Y5L_148 | Minor groove platform | ||
| IL_8Y5L_149 | Minor groove platform | ||
| IL_8Y5L_150 | Minor groove platform | ||
| IL_8Y5L_151 | Single stack bend | ||
| IL_8Y5L_152 | No text annotation | ||
| IL_8Y5L_153 | Single bulged U | ||
| IL_8Y5L_154 | Isolated cWS basepair | ||
| IL_8Y5L_155 | Minor groove platform | ||
| IL_8Y5L_156 | Single bulged A | ||
| IL_8Y5L_157 | Isolated non-canonical cWW pair | ||
| IL_8Y5L_158 | No text annotation | ||
| IL_8Y5L_159 | Minor groove platform | ||
| IL_8Y5L_160 | No text annotation | ||
| IL_8Y5L_161 | No text annotation | ||
| IL_8Y5L_162 | 180 degree turn | ||
| IL_8Y5L_163 | Double sheared with non-canonical cWW | ||
| IL_8Y5L_164 | No text annotation | ||
| IL_8Y5L_165 | No text annotation | ||
| IL_8Y5L_166 | No text annotation | ||
| IL_8Y5L_167 | Isolated non-canonical cWW pair | ||
| IL_8Y5L_168 | No text annotation | ||
| IL_8Y5L_169 | Isolated non-canonical cWW pair | ||
| IL_8Y5L_170 | Double sheared | ||
| IL_8Y5L_171 | Triple sheared related | ||
| IL_8Y5L_172 | Single bulged A | ||
| IL_8Y5L_173 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y5L_001 | No text annotation | ||
| J3_8Y5L_002 | No text annotation | ||
| J3_8Y5L_003 | No text annotation | ||
| J3_8Y5L_004 | No text annotation | ||
| J3_8Y5L_005 | No text annotation | ||
| J3_8Y5L_006 | No text annotation | ||
| J3_8Y5L_007 | No text annotation | ||
| J3_8Y5L_008 | No text annotation | ||
| J3_8Y5L_009 | No text annotation | ||
| J3_8Y5L_010 | No text annotation | ||
| J3_8Y5L_011 | No text annotation | ||
| J3_8Y5L_012 | No text annotation | ||
| J3_8Y5L_013 | Kink-turn 3-way junction | ||
| J3_8Y5L_014 | No text annotation | ||
| J3_8Y5L_015 | No text annotation | ||
| J3_8Y5L_016 | No text annotation | ||
| J3_8Y5L_017 | No text annotation | ||
| J3_8Y5L_018 | No text annotation | ||
| J3_8Y5L_019 | No text annotation | ||
| J3_8Y5L_020 | No text annotation | ||
| J3_8Y5L_021 | No text annotation | ||
| J3_8Y5L_022 | No text annotation | ||
| J3_8Y5L_023 | No text annotation | ||
| J3_8Y5L_024 | No text annotation | ||
| J3_8Y5L_025 | No text annotation | ||
| J3_8Y5L_026 | No text annotation | ||
| J3_8Y5L_027 | No text annotation | ||
| J3_8Y5L_028 | No text annotation | ||
| J3_8Y5L_029 | No text annotation | ||
| J3_8Y5L_030 | No text annotation | ||
| J3_8Y5L_031 | No text annotation | ||
| J3_8Y5L_032 | No text annotation | ||
| J3_8Y5L_033 | No text annotation | ||
| J3_8Y5L_034 | No text annotation | ||
| J3_8Y5L_035 | No text annotation | ||
| J4_8Y5L_001 | No text annotation | ||
| J4_8Y5L_002 | No text annotation | ||
| J4_8Y5L_003 | No text annotation | ||
| J4_8Y5L_004 | No text annotation | ||
| J4_8Y5L_005 | No text annotation | ||
| J4_8Y5L_006 | No text annotation | ||
| J4_8Y5L_007 | No text annotation | ||
| J4_8Y5L_008 | No text annotation | ||
| J4_8Y5L_009 | No text annotation | ||
| J4_8Y5L_010 | No text annotation | ||
| J4_8Y5L_011 | No text annotation | ||
| J4_8Y5L_012 | No text annotation | ||
| J4_8Y5L_013 | No text annotation | ||
| J4_8Y5L_014 | No text annotation | ||
| J4_8Y5L_015 | No text annotation | ||
| J5_8Y5L_001 | No text annotation | ||
| J5_8Y5L_002 | No text annotation | ||
| J5_8Y5L_003 | No text annotation | ||
| J5_8Y5L_004 | No text annotation | ||
| J5_8Y5L_005 | No text annotation | ||
| J5_8Y5L_006 | No text annotation | ||
| J5_8Y5L_007 | No text annotation | ||
| J5_8Y5L_008 | No text annotation | ||
| J5_8Y5L_009 | No text annotation | ||
| J6_8Y5L_001 | No text annotation | ||
| J6_8Y5L_002 | No text annotation | ||
| J7_8Y5L_001 | No text annotation | ||
| J7_8Y5L_002 | No text annotation |
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