IL_8Y5O_008

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5O_008 not in the Motif Atlas

Geometric match to IL_9DFE_011

Geometric discrepancy: 0.2142

The information below is about IL_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8Y5O|1|1|U|293
8Y5O|1|1|A|294
8Y5O|1|1|G|295
*
8Y5O|1|1|C|343
8Y5O|1|1|A|344
8Y5O|1|1|A|345
8Y5O|1|1|A|346
8Y5O|1|1|A|347

Current chains

Chain 1

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24