IL_8Y5O_034
3D structure
- PDB id
- 8Y5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 8Y5O|1|1|A|1143
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5O_034 not in the Motif Atlas
- Geometric match to IL_4V9F_040
- Geometric discrepancy: 0.2449
- The information below is about IL_4V9F_040
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
8Y5O|1|1|U|1018
8Y5O|1|1|U|1019
8Y5O|1|1|A|1020
8Y5O|1|1|A|1021
8Y5O|1|1|G|1022
8Y5O|1|1|U|1023
8Y5O|1|1|G|1024
*
8Y5O|1|1|C|1140
8Y5O|1|1|U|1141
8Y5O|1|1|A|1142
8Y5O|1|1|A|1143
8Y5O|1|1|A|1144
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain j
- 50S ribosomal protein L13
Coloring options: