IL_8Y5O_052

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8Y5O|1|1|U|1523

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5O_052 not in the Motif Atlas

Geometric match to IL_5J7L_299

Geometric discrepancy: 0.169

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8Y5O|1|1|U|1468
8Y5O|1|1|A|1469
8Y5O|1|1|A|1470
8Y5O|1|1|G|1471
*
8Y5O|1|1|U|1520
8Y5O|1|1|G|1521
8Y5O|1|1|A|1522
8Y5O|1|1|U|1523
8Y5O|1|1|G|1524

Current chains

Chain 1

23S rRNA

Nearby chains