IL_8Y5O_099

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

8Y5O|1|1|C|2712, 8Y5O|1|1|U|2713

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5O_099 not in the Motif Atlas

Geometric match to IL_4WF9_103

Geometric discrepancy: 0.1434

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8Y5O|1|1|U|2695
8Y5O|1|1|U|2696
*
8Y5O|1|1|A|2711
8Y5O|1|1|C|2712
8Y5O|1|1|U|2713
8Y5O|1|1|G|2714

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19