IL_8Y5O_131
3D structure
- PDB id
- 8Y5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8Y5O|1|3|A|532, 8Y5O|1|3|U|534, 8Y5O|1|3|A|535
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5O_131 not in the Motif Atlas
- Geometric match to IL_8CRE_423
- Geometric discrepancy: 0.2514
- The information below is about IL_8CRE_423
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Y5O|1|3|G|515
8Y5O|1|3|U|516
8Y5O|1|3|G|517
8Y5O|1|3|C|518
8Y5O|1|3|C|519
8Y5O|1|3|A|520
8Y5O|1|3|G|521
*
8Y5O|1|3|C|528
8Y5O|1|3|G|529
8Y5O|1|3|G|530
8Y5O|1|3|U|531
8Y5O|1|3|A|532
8Y5O|1|3|A|533
8Y5O|1|3|U|534
8Y5O|1|3|A|535
8Y5O|1|3|C|536
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 0
- Elongation factor G
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain H
- 30S ribosomal protein S3
- Chain Q
- 30S ribosomal protein S12
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