IL_8Y5P_032

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_032 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1542

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8Y5P|1|1|U|1004
8Y5P|1|1|C|1005
8Y5P|1|1|C|1006
8Y5P|1|1|C|1007
8Y5P|1|1|A|1008
8Y5P|1|1|A|1009
8Y5P|1|1|A|1010
8Y5P|1|1|G|1011
*
8Y5P|1|1|C|1150
8Y5P|1|1|A|1151

Current chains

Chain 1

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20