IL_8Y5P_100
3D structure
- PDB id
- 8Y5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 8Y5P|1|1|A|2765
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5P_100 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.1411
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8Y5P|1|1|G|2737
8Y5P|1|1|A|2738
8Y5P|1|1|U|2739
8Y5P|1|1|A|2740
8Y5P|1|1|A|2741
8Y5P|1|1|G|2742
*
8Y5P|1|1|C|2762
8Y5P|1|1|G|2763
8Y5P|1|1|A|2764
8Y5P|1|1|A|2765
8Y5P|1|1|A|2766
8Y5P|1|1|C|2767
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
- Chain j
- 50S ribosomal protein L13
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