IL_8Y5P_105

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_105 not in the Motif Atlas

Geometric match to IL_5J7L_356

Geometric discrepancy: 0.2416

The information below is about IL_5J7L_356

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.4

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8Y5P|1|2|G|23
8Y5P|1|2|G|24
8Y5P|1|2|U|25
8Y5P|1|2|C|26
8Y5P|1|2|C|27
8Y5P|1|2|C|28
*
8Y5P|1|2|G|56
8Y5P|1|2|A|57
8Y5P|1|2|A|58
8Y5P|1|2|A|59
8Y5P|1|2|C|60

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18