IL_8Y5P_155
3D structure
- PDB id
- 8Y5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- GUUGC*GAACUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5P_155 not in the Motif Atlas
- Homologous match to IL_8B0X_050
- Geometric discrepancy: 0.3123
- The information below is about IL_8B0X_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Y5P|1|3|G|1124
8Y5P|1|3|U|1125
8Y5P|1|3|U|1126
8Y5P|1|3|G|1127
8Y5P|1|3|C|1128
*
8Y5P|1|3|G|1144
8Y5P|1|3|A|1145
8Y5P|1|3|A|1146
8Y5P|1|3|C|1147
8Y5P|1|3|U|1148
8Y5P|1|3|C|1149
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
Coloring options: