IL_8Y5P_163

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_163 not in the Motif Atlas

Geometric match to IL_8P9A_237

Geometric discrepancy: 0.1745

The information below is about IL_8P9A_237

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8Y5P|1|3|G|1405
8Y5P|1|3|U|1406
8Y5P|1|3|C|1407
*
8Y5P|1|3|G|1494
8Y5P|1|3|U|1495
8Y5P|1|3|C|1496

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 4

mRNA

Chain h

Viomycin