IL_8Y5Q_031
3D structure
- PDB id
- 8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 8Y5Q|1|1|A|1156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5Q_031 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2134
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8Y5Q|1|1|G|997
8Y5Q|1|1|C|998
8Y5Q|1|1|U|999
8Y5Q|1|1|A|1000
8Y5Q|1|1|A|1001
8Y5Q|1|1|G|1002
*
8Y5Q|1|1|C|1153
8Y5Q|1|1|G|1154
8Y5Q|1|1|A|1155
8Y5Q|1|1|A|1156
8Y5Q|1|1|G|1157
8Y5Q|1|1|C|1158
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain z
- 50S ribosomal protein L30
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