IL_8Y5R_015

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8Y5R|1|1|G|801, 8Y5R|1|1|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_015 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8Y5R|1|1|G|674
8Y5R|1|1|A|675
8Y5R|1|1|A|676
8Y5R|1|1|A|677
8Y5R|1|1|C|678
*
8Y5R|1|1|G|799
8Y5R|1|1|A|800
8Y5R|1|1|G|801
8Y5R|1|1|A|802
8Y5R|1|1|U|803
8Y5R|1|1|A|804
8Y5R|1|1|G|805
8Y5R|1|1|C|806

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15