IL_8Y5R_023

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

8Y5R|1|1|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_023 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2179

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8Y5R|1|1|U|847
8Y5R|1|1|C|848
*
8Y5R|1|1|G|930
8Y5R|1|1|U|931
8Y5R|1|1|U|932
8Y5R|1|1|A|933

Current chains

Chain 1

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L30