IL_8Y5R_050

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

8Y5R|1|1|U|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_050 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.1533

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8Y5R|1|1|G|1432
8Y5R|1|1|A|1433
8Y5R|1|1|A|1434
8Y5R|1|1|G|1435
*
8Y5R|1|1|C|1557
8Y5R|1|1|C|1558
8Y5R|1|1|U|1559
8Y5R|1|1|G|1560
8Y5R|1|1|C|1561

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2