IL_8Y5R_073

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8Y5R|1|1|C|2055, 8Y5R|1|1|U|2613, 8Y5R|1|1|A|2614

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_073 not in the Motif Atlas

Geometric match to IL_4WF9_079

Geometric discrepancy: 0.2135

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

8Y5R|1|1|A|2054
8Y5R|1|1|C|2055
8Y5R|1|1|G|2056
*
8Y5R|1|1|C|2612
8Y5R|1|1|U|2613
8Y5R|1|1|A|2614
8Y5R|1|1|U|2615

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain s

50S ribosomal protein L22