IL_8Y5R_094

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_094 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.0958

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8Y5R|1|1|C|2652
8Y5R|1|1|U|2653
8Y5R|1|1|A|2654
8Y5R|1|1|G|2655
8Y5R|1|1|U|2656
8Y5R|1|1|A|2657
8Y5R|1|1|C|2658
*
8Y5R|1|1|G|2663
8Y5R|1|1|G|2664
8Y5R|1|1|A|2665
8Y5R|1|1|C|2666
8Y5R|1|1|C|2667
8Y5R|1|1|G|2668

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain f

50S ribosomal protein L6