IL_8Y5R_096
3D structure
- PDB id
- 8Y5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 8Y5R|1|1|U|2689, 8Y5R|1|1|U|2690
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5R_096 not in the Motif Atlas
- Geometric match to IL_4WF9_102
- Geometric discrepancy: 0.1314
- The information below is about IL_4WF9_102
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8Y5R|1|1|U|2687
8Y5R|1|1|G|2688
8Y5R|1|1|U|2689
8Y5R|1|1|U|2690
8Y5R|1|1|C|2691
*
8Y5R|1|1|G|2718
8Y5R|1|1|G|2719
8Y5R|1|1|U|2720
8Y5R|1|1|A|2721
8Y5R|1|1|G|2722
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain n
- 50S ribosomal protein L17
- Chain p
- 50S ribosomal protein L19
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