IL_8Y5R_107

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_107 not in the Motif Atlas

Geometric match to IL_5J7L_359

Geometric discrepancy: 0.0915

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8Y5R|1|2|C|71
8Y5R|1|2|G|72
8Y5R|1|2|A|73
8Y5R|1|2|U|74
8Y5R|1|2|G|75
8Y5R|1|2|G|76
8Y5R|1|2|U|77
8Y5R|1|2|A|78
8Y5R|1|2|G|79
*
8Y5R|1|2|C|97
8Y5R|1|2|G|98
8Y5R|1|2|A|99
8Y5R|1|2|G|100
8Y5R|1|2|A|101
8Y5R|1|2|G|102
8Y5R|1|2|U|103
8Y5R|1|2|A|104
8Y5R|1|2|G|105

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain m

50S ribosomal protein L16

Chain v

50S ribosomal protein L25