IL_8Y5R_130

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_130 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.2128

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8Y5R|1|3|G|450
8Y5R|1|3|A|451
8Y5R|1|3|A|452
8Y5R|1|3|G|453
8Y5R|1|3|G|454
8Y5R|1|3|G|455
*
8Y5R|1|3|C|477
8Y5R|1|3|A|478
8Y5R|1|3|U|479
8Y5R|1|3|U|480
8Y5R|1|3|G|481
8Y5R|1|3|A|482
8Y5R|1|3|C|483

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16