IL_8Y5R_165

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8Y5R|1|3|C|1400, 8Y5R|1|3|A|1503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_165 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0984

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8Y5R|1|3|C|1399
8Y5R|1|3|C|1400
8Y5R|1|3|G|1401
*
8Y5R|1|3|C|1501
8Y5R|1|3|A|1502
8Y5R|1|3|A|1503
8Y5R|1|3|G|1504

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA