IL_8Y6O_007
3D structure
- PDB id
- 8Y6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.38 Å
Loop
- Sequence
- CAAUGAG*UGAG
- Length
- 11 nucleotides
- Bulged bases
- 8Y6O|1|J|U|36
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y6O_007 not in the Motif Atlas
- Geometric match to IL_3SIU_002
- Geometric discrepancy: 0.14
- The information below is about IL_3SIU_002
- Detailed Annotation
- Kink-turn from U4
- Broad Annotation
- Kink-turn
- Motif group
- IL_51265.4
- Basepair signature
- cWW-L-tSH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Y6O|1|J|C|33
8Y6O|1|J|A|34
8Y6O|1|J|A|35
8Y6O|1|J|U|36
8Y6O|1|J|G|37
8Y6O|1|J|A|38
8Y6O|1|J|G|39
*
8Y6O|1|J|U|47
8Y6O|1|J|G|48
8Y6O|1|J|A|49
8Y6O|1|J|G|50
Current chains
- Chain J
- U4atac snRNA
Nearby chains
- Chain G
- Pre-mRNA-processing factor 6
- Chain L
- U4/U6 small nuclear ribonucleoprotein Prp31
- Chain N
- U4/U6 small nuclear ribonucleoprotein Prp3
- Chain O
- NHP2-like protein 1
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