IL_8Y6O_010

3D structure

PDB id

8Y6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part

Experimental method

ELECTRON MICROSCOPY

Resolution

3.38 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

8Y6O|1|P|A|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y6O_010 not in the Motif Atlas

Geometric match to IL_4R4V_003

Geometric discrepancy: 0.2546

The information below is about IL_4R4V_003

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8Y6O|1|P|C|105
8Y6O|1|P|A|106
8Y6O|1|P|G|107
*
8Y6O|1|P|C|128
8Y6O|1|P|G|129

Current chains

Chain P

U11 snRNA

Nearby chains

Chain Y

U11/U12 small nuclear ribonucleoprotein 48 kDa protein

Chain Z

Programmed cell death protein 7

Chain o

Small nuclear ribonucleoprotein-associated proteins B and B'