IL_8YDF_171
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDF_171 not in the Motif Atlas
- Geometric match to IL_8B0X_062
- Geometric discrepancy: 0.0731
- The information below is about IL_8B0X_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YDF|1|3|A|1430
8YDF|1|3|A|1431
8YDF|1|3|G|1432
8YDF|1|3|A|1433
8YDF|1|3|A|1434
8YDF|1|3|G|1435
*
8YDF|1|3|C|1466
8YDF|1|3|C|1467
8YDF|1|3|A|1468
8YDF|1|3|C|1469
8YDF|1|3|U|1470
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 30S ribosomal protein S20
- Chain k
- 50S ribosomal protein L14
- Chain p
- 50S ribosomal protein L19
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