IL_8YDG_036

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8YDG|1|1|U|1033

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_036 not in the Motif Atlas

Geometric match to IL_8B0X_102

Geometric discrepancy: 0.2534

The information below is about IL_8B0X_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8YDG|1|1|G|1031
8YDG|1|1|A|1032
8YDG|1|1|U|1033
8YDG|1|1|G|1034
*
8YDG|1|1|C|1121
8YDG|1|1|G|1122
8YDG|1|1|C|1123

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L36

Chain m

50S ribosomal protein L16