IL_8YDG_043

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_043 not in the Motif Atlas

Geometric match to IL_8B0X_108

Geometric discrepancy: 0.1367

The information below is about IL_8B0X_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8YDG|1|1|A|1262
8YDG|1|1|U|1263
8YDG|1|1|A|1264
8YDG|1|1|A|1265
8YDG|1|1|G|1266
8YDG|1|1|U|1267
8YDG|1|1|A|1268
8YDG|1|1|A|1269
*
8YDG|1|1|U|2011
8YDG|1|1|G|2012
8YDG|1|1|A|2013
8YDG|1|1|A|2014
8YDG|1|1|A|2015
8YDG|1|1|U|2016
8YDG|1|1|U|2017

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain d

50S ribosomal protein L4

Chain s

50S ribosomal protein L22