IL_8YDG_062

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8YDG|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_062 not in the Motif Atlas

Geometric match to IL_8B0X_127

Geometric discrepancy: 0.1221

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8YDG|1|1|C|1686
8YDG|1|1|G|1687
8YDG|1|1|U|1688
8YDG|1|1|A|1689
8YDG|1|1|A|1690
8YDG|1|1|C|1691
*
8YDG|1|1|G|1696
8YDG|1|1|G|1697
8YDG|1|1|A|1698
8YDG|1|1|G|1699
8YDG|1|1|A|1700
8YDG|1|1|A|1701
8YDG|1|1|G|1702

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2