IL_8YDG_063

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8YDG|1|1|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_063 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.1665

The information below is about IL_8B0X_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YDG|1|1|U|1712
8YDG|1|1|A|1713
8YDG|1|1|U|1714
8YDG|1|1|G|1715
8YDG|1|1|U|1716
8YDG|1|1|A|1717
8YDG|1|1|G|1718
*
8YDG|1|1|U|1742
8YDG|1|1|G|1743
8YDG|1|1|A|1744
8YDG|1|1|A|1745
8YDG|1|1|A|1746

Current chains

Chain 1

23S rRNA

Nearby chains