IL_8YDG_160

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_160 not in the Motif Atlas

Geometric match to IL_8B0X_056

Geometric discrepancy: 0.2512

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8YDG|1|3|C|1303
8YDG|1|3|G|1304
8YDG|1|3|G|1305
8YDG|1|3|A|1306
8YDG|1|3|U|1307
8YDG|1|3|U|1308
*
8YDG|1|3|A|1329
8YDG|1|3|U|1330
8YDG|1|3|G|1331
8YDG|1|3|A|1332
8YDG|1|3|A|1333
8YDG|1|3|G|1334

Current chains

Chain 3

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S13