IL_8YDH_069

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDH|1|1|U|1851
8YDH|1|1|U|1852
8YDH|1|1|A|1853
8YDH|1|1|A|1854
8YDH|1|1|U|1855
8YDH|1|1|U|1856
8YDH|1|1|G|1857
8YDH|1|1|A|1858
8YDH|1|1|U|1859
8YDH|1|1|G|1860
*
8YDH|1|1|U|1882
8YDH|1|1|U|1883
8YDH|1|1|G|1884
8YDH|1|1|A|1885
8YDH|1|1|U|1886
8YDH|1|1|C|1887
8YDH|1|1|G|1888
8YDH|1|1|A|1889
8YDH|1|1|A|1890
8YDH|1|1|G|1891

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA