IL_8YDH_119
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8YDH|1|3|U|173
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDH_119 not in the Motif Atlas
- Geometric match to IL_8B0X_012
- Geometric discrepancy: 0.123
- The information below is about IL_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24485.1
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8YDH|1|3|G|147
8YDH|1|3|G|148
8YDH|1|3|A|149
8YDH|1|3|U|150
8YDH|1|3|A|151
8YDH|1|3|A|152
8YDH|1|3|C|153
*
8YDH|1|3|G|168
8YDH|1|3|C|169
8YDH|1|3|U|170
8YDH|1|3|A|171
8YDH|1|3|A|172
8YDH|1|3|U|173
8YDH|1|3|A|174
8YDH|1|3|C|175
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Y
- 30S ribosomal protein S20
Coloring options: