IL_8YDH_143

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDH_143 not in the Motif Atlas

Geometric match to IL_8B0X_035

Geometric discrepancy: 0.0692

The information below is about IL_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8YDH|1|3|G|774
8YDH|1|3|G|775
8YDH|1|3|G|776
8YDH|1|3|A|777
8YDH|1|3|G|778
*
8YDH|1|3|U|804
8YDH|1|3|C|805

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

30S ribosomal protein S11

Chain b

50S ribosomal protein L2