IL_8YDI_033

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_033 not in the Motif Atlas

Geometric match to IL_8B0X_098

Geometric discrepancy: 0.1552

The information below is about IL_8B0X_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8YDI|1|1|U|1004
8YDI|1|1|C|1005
8YDI|1|1|C|1006
8YDI|1|1|C|1007
8YDI|1|1|A|1008
8YDI|1|1|A|1009
8YDI|1|1|A|1010
8YDI|1|1|G|1011
*
8YDI|1|1|C|1150
8YDI|1|1|A|1151

Current chains

Chain 1

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20