IL_8YDI_050

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

8YDI|1|1|U|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_050 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.1481

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8YDI|1|1|G|1432
8YDI|1|1|A|1433
8YDI|1|1|A|1434
8YDI|1|1|G|1435
*
8YDI|1|1|C|1557
8YDI|1|1|C|1558
8YDI|1|1|U|1559
8YDI|1|1|G|1560
8YDI|1|1|C|1561

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2