IL_8YDJ_103
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_103 not in the Motif Atlas
- Geometric match to IL_8B0X_170
- Geometric discrepancy: 0.1932
- The information below is about IL_8B0X_170
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.1
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
8YDJ|1|1|U|2847
8YDJ|1|1|G|2848
8YDJ|1|1|U|2849
8YDJ|1|1|A|2850
8YDJ|1|1|A|2851
8YDJ|1|1|G|2852
*
8YDJ|1|1|U|2865
8YDJ|1|1|U|2866
8YDJ|1|1|G|2867
8YDJ|1|1|A|2868
8YDJ|1|1|G|2869
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain n
- 50S ribosomal protein L17
- Chain p
- 50S ribosomal protein L19
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