IL_8YDJ_140
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 8YDJ|1|3|A|702
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_140 not in the Motif Atlas
- Geometric match to IL_8B0X_034
- Geometric discrepancy: 0.1774
- The information below is about IL_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8YDJ|1|3|U|684
8YDJ|1|3|G|685
8YDJ|1|3|U|686
8YDJ|1|3|A|687
8YDJ|1|3|G|688
*
8YDJ|1|3|C|699
8YDJ|1|3|G|700
8YDJ|1|3|U|701
8YDJ|1|3|A|702
8YDJ|1|3|G|703
8YDJ|1|3|A|704
8YDJ|1|3|G|705
8YDJ|1|3|A|706
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 30S ribosomal protein S11
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