IL_8YLD_019

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8YLD|1|2|U|313, 8YLD|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_019 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.1458

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8YLD|1|2|U|311
8YLD|1|2|A|312
8YLD|1|2|U|313
8YLD|1|2|C|314
8YLD|1|2|A|315
8YLD|1|2|A|316
*
8YLD|1|2|U|348
8YLD|1|2|U|349
8YLD|1|2|U|350
8YLD|1|2|C|351
8YLD|1|2|A|352
8YLD|1|2|A|353
8YLD|1|2|C|354
8YLD|1|2|G|355

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sc

Small ribosomal subunit protein uS12A